Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NSE_0637 | NSE_0638 | NSE_0637 | NSE_0638 | Putative ubiquinone biosynthesis protein; Identified by similarity to SP:P27854; match to protein family HMM PF03109. | Conserved hypothetical protein; Identified by similarity to GB:AAS14721.1. | 0.439 |
NSE_0637 | nuoE | NSE_0637 | NSE_0636 | Putative ubiquinone biosynthesis protein; Identified by similarity to SP:P27854; match to protein family HMM PF03109. | NADH dehydrogenase I, E subunit; Identified by similarity to GB:CAA71011.1; match to protein family HMM PF01257; match to protein family HMM TIGR01958. | 0.774 |
NSE_0638 | NSE_0637 | NSE_0638 | NSE_0637 | Conserved hypothetical protein; Identified by similarity to GB:AAS14721.1. | Putative ubiquinone biosynthesis protein; Identified by similarity to SP:P27854; match to protein family HMM PF03109. | 0.439 |
NSE_0638 | NSE_0639 | NSE_0638 | NSE_0639 | Conserved hypothetical protein; Identified by similarity to GB:AAS14721.1. | Hypothetical protein; Identified by Glimmer2; putative. | 0.584 |
NSE_0638 | nuoE | NSE_0638 | NSE_0636 | Conserved hypothetical protein; Identified by similarity to GB:AAS14721.1. | NADH dehydrogenase I, E subunit; Identified by similarity to GB:CAA71011.1; match to protein family HMM PF01257; match to protein family HMM TIGR01958. | 0.439 |
NSE_0639 | NSE_0638 | NSE_0639 | NSE_0638 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by similarity to GB:AAS14721.1. | 0.584 |
nuoE | NSE_0637 | NSE_0636 | NSE_0637 | NADH dehydrogenase I, E subunit; Identified by similarity to GB:CAA71011.1; match to protein family HMM PF01257; match to protein family HMM TIGR01958. | Putative ubiquinone biosynthesis protein; Identified by similarity to SP:P27854; match to protein family HMM PF03109. | 0.774 |
nuoE | NSE_0638 | NSE_0636 | NSE_0638 | NADH dehydrogenase I, E subunit; Identified by similarity to GB:CAA71011.1; match to protein family HMM PF01257; match to protein family HMM TIGR01958. | Conserved hypothetical protein; Identified by similarity to GB:AAS14721.1. | 0.439 |