STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSE_0860Type IV secretion system protein, VirB6 family; Identified by match to protein family HMM PF04610. (1169 aa)    
Predicted Functional Partners:
virB4-2
Type IV secretion system protein VirB4; Identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929.
 
  
 0.980
virB3
Type IV secretion system protein VirB3; Identified by similarity to GB:AAM00402.1; match to protein family HMM PF05101.
  
  
 0.950
virB8-2
Type IV secretion system protein VirB8; Identified by similarity to GB:AAM00420.1; match to protein family HMM PF04335.
 
  
 0.940
virB4-1
Type IV secretion system protein VirB4; Identified by similarity to GB:AAM00400.1.
 
  
 0.914
virB9-2
Type IV secretion system protein VirB9; Identified by similarity to GB:AAM00421.1; match to protein family HMM PF03524.
 
 
 0.909
virB9-1
Type IV secretion system protein VirB9; Identified by similarity to GB:AAM00415.1; match to protein family HMM PF03524.
 
 
 0.897
virB6
Type IV secretion system protein VirB6; Identified by similarity to GB:AAM00403.1; match to protein family HMM PF04610.
     
0.881
virB10
Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00413.1; match to protein family HMM PF03743.
 
  
 0.860
virD4
Type IV secretion system protein VirD4; Identified by similarity to GB:AAM00416.1; match to protein family HMM PF02534.
 
   
 0.851
NSE_0861
Type IV secretion system protein, VirB6 family; Identified by match to protein family HMM PF04610.
     
0.836
Your Current Organism:
Neorickettsia sennetsu
NCBI taxonomy Id: 222891
Other names: N. sennetsu str. Miyayama, Neorickettsia sennetsu Miyayama, Neorickettsia sennetsu str. Miyayama
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.