STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELS17_05625Unannotated protein. (249 aa)    
Predicted Functional Partners:
ELS17_16350
Unannotated protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.774
rps17
Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.722
rpl11
Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.
   
   0.687
rpl13
Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.686
rpl3
Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.677
rpl24
Unannotated protein; Located at the polypeptide exit tunnel on the outside of the subunit.
   
   0.674
rpl15
Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.666
ELS17_03880
Unannotated protein.
  
     0.665
ELS17_03875
Unannotated protein.
  
     0.648
ELS17_18220
Unannotated protein.
  
     0.643
Your Current Organism:
Natrinema altunense
NCBI taxonomy Id: 222984
Other names: AS 1.3731, JCM 12890, N. altunense, Natrinema aibiensis, Natrinema ajinwuensis, Natrinema altuensis, Natrinema altunense Xu et al. 2005, strain AJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.