Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ELS17_01995 | ELS17_05695 | GCA_000731985_01795 | GCA_000731985_02223 | Unannotated protein. | Unannotated protein. | 0.836 |
ELS17_01995 | ELS17_06775 | GCA_000731985_01795 | GCA_000731985_03797 | Unannotated protein. | Unannotated protein. | 0.877 |
ELS17_01995 | ELS17_06905 | GCA_000731985_01795 | GCA_000731985_03248 | Unannotated protein. | Unannotated protein. | 0.507 |
ELS17_01995 | ELS17_07330 | GCA_000731985_01795 | GCA_000731985_03147 | Unannotated protein. | Unannotated protein. | 0.701 |
ELS17_01995 | ELS17_07660 | GCA_000731985_01795 | GCA_000731985_02699 | Unannotated protein. | Unannotated protein. | 0.736 |
ELS17_01995 | fen | GCA_000731985_01795 | GCA_000731985_00896 | Unannotated protein. | Unannotated protein; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.507 |
ELS17_01995 | rpl1 | GCA_000731985_01795 | GCA_000731985_02991 | Unannotated protein. | Unannotated protein; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.587 |
ELS17_01995 | topA | GCA_000731985_01795 | GCA_000731985_00973 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.891 |
ELS17_05695 | ELS17_01995 | GCA_000731985_02223 | GCA_000731985_01795 | Unannotated protein. | Unannotated protein. | 0.836 |
ELS17_05695 | ELS17_06775 | GCA_000731985_02223 | GCA_000731985_03797 | Unannotated protein. | Unannotated protein. | 0.902 |
ELS17_05695 | ELS17_07330 | GCA_000731985_02223 | GCA_000731985_03147 | Unannotated protein. | Unannotated protein. | 0.915 |
ELS17_05695 | ELS17_07660 | GCA_000731985_02223 | GCA_000731985_02699 | Unannotated protein. | Unannotated protein. | 0.868 |
ELS17_05695 | aspS | GCA_000731985_02223 | GCA_000731985_00056 | Unannotated protein. | Unannotated protein; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn). | 0.420 |
ELS17_05695 | fen | GCA_000731985_02223 | GCA_000731985_00896 | Unannotated protein. | Unannotated protein; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.404 |
ELS17_05695 | rpl1 | GCA_000731985_02223 | GCA_000731985_02991 | Unannotated protein. | Unannotated protein; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.921 |
ELS17_05695 | topA | GCA_000731985_02223 | GCA_000731985_00973 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.944 |
ELS17_06775 | ELS17_01995 | GCA_000731985_03797 | GCA_000731985_01795 | Unannotated protein. | Unannotated protein. | 0.877 |
ELS17_06775 | ELS17_05695 | GCA_000731985_03797 | GCA_000731985_02223 | Unannotated protein. | Unannotated protein. | 0.902 |
ELS17_06775 | ELS17_06905 | GCA_000731985_03797 | GCA_000731985_03248 | Unannotated protein. | Unannotated protein. | 0.890 |
ELS17_06775 | ELS17_07330 | GCA_000731985_03797 | GCA_000731985_03147 | Unannotated protein. | Unannotated protein. | 0.877 |
page 1 of 5