Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AS25_02170Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
AS25_01305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
AS25_09650
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.699
AS25_02505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
glgB
Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
     
  0.677
AS25_05265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
AS25_06520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.617
AS25_07465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.613
AS25_01140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
AS25_02165
Subtilisin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
     0.599
AS25_00445
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.593
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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