Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AS25_03325Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)    
Predicted Functional Partners:
AS25_03335
Potassium ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.858
AS25_03330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
AS25_03310
dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.756
AS25_03200
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
AS25_03940
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
AS25_03645
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
AS25_02990
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.671
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.671
AS25_02835
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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