STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AS25_03485Peptidase M50B family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M50B family. (395 aa)    
Predicted Functional Partners:
AS25_12790
Phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.741
AS25_03480
Carboxylate--amine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.646
AS25_10205
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.599
AS25_03490
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.588
AS25_11735
DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
 
     0.450
AS25_04290
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.427
AS25_03465
Primosomal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
pup
Ubiquitin; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
 
     0.416
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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