Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AS25_04055ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa)    
Predicted Functional Partners:
AS25_04050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
AS25_08395
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MT-A70-like family.
    
   0.617
AS25_10410
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.604
AS25_12210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.604
AS25_12965
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.604
AS25_04045
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.480
AS25_01015
Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.433
AS25_09815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0311 family.
   
 0.433
AS25_12685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.433
AS25_12760
Phenol 2-monooxygenase; Catalyzes the formation of catechol from phenol; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.433
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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