Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AS25_04205Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)    
Predicted Functional Partners:
AS25_04500
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.787
AS25_04210
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.669
AS25_05825
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.608
AS25_09210
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.603
AS25_05375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.589
AS25_07280
PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.580
AS25_12735
3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.560
AS25_02045
enoyl-CoA hydratase; Catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.547
AS25_09005
Fatty oxidation complex subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.542
AS25_03990
Ubiquinol-cytochrome c reductase cytochrome b subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.529
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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