Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AS25_04415DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)    
Predicted Functional Partners:
AS25_10645
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
AS25_04420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
AS25_04425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
AS25_02820
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
AS25_04405
Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
AS25_10640
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
AS25_09725
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.494
AS25_04410
Bile acid:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
AS25_06650
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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