Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AS25_04580Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (146 aa)    
Predicted Functional Partners:
AS25_04585
Arsenic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.992
AS25_06520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.783
AS25_04590
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.762
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.627
AS25_01265
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.550
AS25_05365
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.
  
 
 0.550
AS25_09555
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.550
AS25_00380
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.522
AS25_10595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.499
AS25_07930
Para-aminobenzoate synthase, component I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.494
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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