Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AS25_04855Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (884 aa)    
Predicted Functional Partners:
AS25_10225
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.957
AS25_03190
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.932
AS25_10205
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.931
AS25_05030
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.923
AS25_11115
Converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.919
AS25_10210
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.901
AS25_12155
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.893
AS25_10255
Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.890
AS25_13125
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.879
AS25_06565
Uroporphyrinogen III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.872
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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