Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AS25_05575Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)    
Predicted Functional Partners:
AS25_05580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.902
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.815
AS25_05565
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.755
AS25_07315
Ferritin; Iron-storage protein.
     
 0.755
AS25_05570
PhoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.642
AS25_05545
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.628
tatC
Preprotein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.601
AS25_00060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.576
AS25_00040
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.553
AS25_00050
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.527
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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