Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AS25_06255LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)    
Predicted Functional Partners:
AS25_06250
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.977
AS25_08760
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.892
AS25_08135
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.844
AS25_06245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.483
AS25_13655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.475
AS25_01595
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.442
AS25_07215
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.442
AS25_07675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.425
AS25_05645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.410
AS25_07670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.408
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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