Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AS25_070152'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)    
Predicted Functional Partners:
AS25_07010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.859
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.655
AS25_00185
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
AS25_04215
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
disA
DNA integrity scanning protein DisA; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.
  
     0.618
AS25_07410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
AS25_11580
Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
AS25_07025
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
AS25_07030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.517
AS25_02920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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