Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AS25_07375Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)    
Predicted Functional Partners:
AS25_07370
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.887
AS25_07355
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.877
AS25_07350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.782
AS25_07360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.775
AS25_07365
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.756
AS25_04500
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.676
AS25_04000
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.649
AS25_09745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.633
kgd
Alpha-ketoglutarate decarboxylase; Kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.596
AS25_02390
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.563
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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