Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AS25_07620Di- and tripeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
AS25_08915
Urea amidolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.990
AS25_04500
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AS25_07615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
AS25_02460
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
  
  
  0.685
glsA
Glutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.
     
  0.661
AS25_07610
Acylphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
pxpA
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
      0.644
AS25_13445
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
AS25_06840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
AS25_03765
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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