Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AS25_12965Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)    
Predicted Functional Partners:
AS25_12970
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.758
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
  0.673
AS25_04730
Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.619
AS25_04055
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.604
AS25_01015
Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.573
AS25_09815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0311 family.
   
  0.573
AS25_12685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.573
AS25_12760
Phenol 2-monooxygenase; Catalyzes the formation of catechol from phenol; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.573
AS25_12910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.573
AS25_12915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.573
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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