Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AS25_13640ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
AS25_13645
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
AS25_02265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.597
AS25_06875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.565
AS25_08835
Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.565
AS25_12205
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.565
AS25_08875
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.559
AS25_04285
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.532
AS25_09550
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.532
AS25_13630
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.482
AS25_06395
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.474
Your Current Organism:
Kocuria marina
NCBI taxonomy Id: 223184
Other names: CCUG 51442, JCM 13363, KCTC 9943, KMM 3905, Kocuria marina Kim et al. 2004, Kocuria sp. KMM 3905
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