Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
lrpLeucine-responsive regulatory protein; See PMID:20190049 for expression data; similar to SP:P37403; identified by sequence similarity; putative. (162 aa)    
Predicted Functional Partners:
dadA
D-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids.
  
    0.763
AAO53656.1
Endoribonuclease L-PSP family protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00004.
       0.763
pobR
Transcriptional regulator PobR.
   
  
 0.643
pcaQ
Pca operon transcriptional activator PcaQ; See PMID:20190049 for expression data; similar to GP:10442737, and SP:P52668; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
   
  
 0.633
vanR
Transcriptional regulator VanR; See PMID:20190049 for expression data.
      
 0.629
dadX
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.609
AAO53652.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to SP:P37906; identified by sequence similarity; putative.
       0.533
AAO56237.1
Biotin carboxylase/biotin-containing subunit; Similar to GP:15159866; identified by sequence similarity; putative.
      
 0.496
AAO56239.1
Carboxyl transferase domain protein; Similar to GP:15159867; identified by sequence similarity; putative.
      
 0.496
AAO53659.1
DNA-binding protein; See PMID:20190049 for expression data; similar to GP:9951617; identified by sequence similarity; putative.
  
  
 0.462
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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