Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO53661.1Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF02550. (643 aa)    
Predicted Functional Partners:
cycB
Cytochrome c5; See PMID:20190049 for expression data; similar to GB:Z11766, and PID:47029; identified by sequence similarity; putative.
       0.768
AAO53659.1
DNA-binding protein; See PMID:20190049 for expression data; similar to GP:9951617; identified by sequence similarity; putative.
       0.744
dadX
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.688
AAO53656.1
Endoribonuclease L-PSP family protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00004.
       0.569
AAO58575.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:3955015, and GP:3955015; identified by sequence similarity; putative.
  
     0.549
fadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
 
 0.539
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.474
sucC
succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
 
 0.462
dadA
D-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids.
   
   0.459
plsB
Glycerol-3-phosphate acyltransferase; See PMID:20190049 for expression data; Belongs to the GPAT/DAPAT family.
  
     0.459
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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