Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO53663.1Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF00070. (417 aa)    
Predicted Functional Partners:
AAO53664.1
Metallo-beta-lactamase superfamily protein; Similar to GP:12721862; identified by sequence similarity; putative.
 
 
 0.943
AAO53662.1
Membrane protein, putative; Identified by match to PFAM protein family HMM PF03334.
 
   
 0.925
cysI
Sulphite reductase; See PMID:20190049 for expression data.
   
 0.911
AAO58015.1
Iron-uptake factor; Similar to GP:9950754, and GP:2981043; identified by sequence similarity; putative.
    
 0.903
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
    
 0.902
cysK
Cysteine synthase A; See PMID:20190049 for expression data; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.901
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.728
AAO53665.1
Sigma-54 dependent transcriptional regulator; Identified by match to PFAM protein family HMM PF02796.
     
 0.590
soxD-1
Sarcosine oxidase, delta subunit; Similar to SP:Q46336, GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; putative.
  
 
 0.415
soxD-2
Sarcosine oxidase, delta subunit; Similar to GP:13241963, and SP:Q46336; identified by sequence similarity; putative.
  
 
 0.415
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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