Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO53725.1ISPssy, transposase; Similar to GP:13094159, and GP:4514540; identified by sequence similarity; putative. (325 aa)    
Predicted Functional Partners:
ABV02589.1
Protein of unknown function; See PMID:20190049 for expression data; similar to gb:AAO55966; identified by sequence similarity; putative.
       0.639
cobB4
Transcriptional regulator, Sir2 family; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily.
      
 0.432
AAO58836.1
Lipoprotein, putative; See PMID:20190049 for expression data.
      
 0.429
AAO58849.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
      
 0.429
AAO58852.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
      
 0.429
AAO58856.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02912.
      
 0.429
ADD53001.1
Protein of unknown function; PMID:20190049.
      
 0.429
AAO58835.1
EF hand domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00036.
      
 0.426
AAO58833.1
ISPsy5, transposase.
      
 0.425
AAO58834.1
ISPsy5, Orf1; The gene assignment is based on its position in a multicopy insertion sequence, directly adjacent to an ORF matching an HMM for the IS66 family; similar to GP:8037784; identified by sequence similarity; putative.
      
 0.425
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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