Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO53817.1tonB protein, putative; Similar to SP:O34261; identified by sequence similarity; putative. (273 aa)    
Predicted Functional Partners:
AAO53816.1
Biopolymer transport protein ExbB, putative; Similar to SP:O34260, and SP:P18783; identified by sequence similarity; putative.
 
 
 0.905
AAO53815.1
Biopolymer transport protein ExbD, putative; Identified by match to PFAM protein family HMM PF02472.
 
 
 0.901
exbB-2
TonB system transport protein ExbB; Similar to GP:3916254; identified by sequence similarity; putative.
 
 
 0.823
exbB-3
TonB system transport protein ExbB.
 
 
 0.817
exbD-2
TonB system transport protein ExbD; Similar to GP:3916255; identified by sequence similarity; putative.
 
 
 0.748
AAO56772.1
TonB-dependent siderophore receptor, putative; See PMID:20190049 for expression data; similar to GP:2981048, and SP:P00089; identified by sequence similarity; putative.
 
 
 0.734
exbD-3
TonB system transport protein ExbD.
 
 
 0.728
AAO54733.1
TonB-dependent siderophore receptor, putative; Similar to GP:2981048; identified by sequence similarity; putative.
 
 
 0.724
AAO54326.1
TonB-dependent siderophore receptor, putative.
 
 
 0.713
AAO53814.1
TonB system transport protein, putative; Identified by match to TIGR protein family HMM TIGR01783.
 
 
 0.611
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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