Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AAO53863.1Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer. (106 aa)    
Predicted Functional Partners:
AAO53864.1
Type IV pilus biogenesis protein; Similar to GB:D26185, SP:P37437, PID:467335, and GB:AL009126; identified by sequence similarity; putative.
       0.747
AAO53715.1
Conserved hypothetical protein; Similar to GP:4324614; identified by sequence similarity; putative.
   
  
 0.648
AAO58334.1
Bacterioferritin, putative.
   
    0.524
AAO55027.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
   
    0.516
AAO54938.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
   
    0.506
mucA
Sigma factor algU negative regulatory protein MucA; See PMID:20190049 for expression data; similar to SP:P38107; identified by sequence similarity; putative.
   
    0.502
AAO53865.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.480
AAO56659.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
   
  
 0.474
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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