Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO53887.1Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer. (46 aa)    
Predicted Functional Partners:
AAO53884.1
GGDEF domain protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01690.
       0.773
AAO53885.1
Endonuclease/exonuclease/phosphatase family protein; See PMID:20190049 for expression data; similar to GP:9106456; identified by sequence similarity; putative.
       0.773
dsbA
Thiol:disulfide interchange protein DsbA; Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins (By similarity); Belongs to the thioredoxin family. DsbA subfamily.
       0.773
AAO53883.1
N-acetylmuramoyl-L-alanine amidase, family 2; Similar to SP:P25262, SP:P25266, and PID:43471; identified by sequence similarity; putative.
       0.533
engB
GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.524
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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