STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srkAConserved protein of unknown function; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response. (324 aa)    
Predicted Functional Partners:
rarD-1
rarD protein.
       0.552
AAO54031.1
ABC transporter, permease protein.
       0.505
AAO54032.1
ABC transporter, permease protein.
       0.505
AAO54029.1
Transcriptional repressor, LacI family; Similar to GP:290603, and SP:P25551; identified by sequence similarity; putative.
       0.497
AAO54030.1
ABC transporter, periplasmic substrate-binding protein.
       0.497
AAO54033.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.497
cpdA
Ser/Thr protein phosphatase family protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
       0.451
AAO58303.1
CbiG protein/precorrin-3B C17-methyltransferase; See PMID:20190049 for expression data.
  
    0.429
AAO54026.1
Identified by match to PFAM protein family HMM PF01381.
 
     0.400
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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