Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO54224.1ABC transporter, ATP-binding protein. (236 aa)    
Predicted Functional Partners:
AAO54222.1
Lipoprotein, putative; See PMID:20190049 for expression data.
 
  
 0.996
AAO54225.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
 
  
 0.994
AAO54223.1
Permease, putative; See PMID:20190049 for expression data.
 
 
 0.985
AAO54221.1
Outer membrane protein OmpW; See PMID:20190049 for expression data.
 
   
 0.822
AAO58910.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.801
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.733
AAO55157.1
ABC transporter, permease protein, putative.
  
 
 0.607
lolC
Lipoprotein releasing system transmembrane protein LolC; See PMID:20190049 for expression data.
  
 
 0.607
lolE
Lipoprotein releasing system transmembrane protein LolE; See PMID:20190049 for expression data.
  
 
 0.607
AAO56962.1
dnaK suppressor protein, putative; Similar to SP:P18274; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P18274, identified by sequence similarity, putative.
   
  
 0.578
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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