Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO54311.1ABC transporter, ATP-binding protein; Identified by match to TIGR protein family HMM TIGR00955. (517 aa)    
Predicted Functional Partners:
AAO54309.1
ABC transporter, permease protein; Identified by match to PFAM protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.994
AAO54310.1
ABC transporter, permease protein, putative; Similar to GP:13937515; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
AAO54880.1
ABC transporter, permease protein; Similar to SP:P09142, and PID:45593; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.976
AAO54688.1
Bmp family protein; Similar to GP:13937517; identified by sequence similarity; putative.
 
 
 0.972
AAO54881.1
ABC transporter, permease protein; Identified by match to PFAM protein family HMM PF03073; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.971
AAO54301.1
Bmp family protein; Similar to GP:4581460; identified by sequence similarity; putative.
 
 
 0.970
AAO54882.1
Bmp family protein; Similar to SP:P04772, and PID:39533; identified by sequence similarity; putative.
 
 
 0.965
AAO54877.1
ABC transporter, ATP-binding protein; Similar to SP:P09142, and PID:45593; identified by sequence similarity; putative.
  
  
 
0.918
AAO54689.1
ABC transporter, ATP-binding protein; Similar to GP:15023582; identified by sequence similarity; putative.
  
  
 
0.915
AAO54690.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.467
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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