Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO54433.1Conserved domain protein; Similar to GP:17431353; identified by sequence similarity; putative. (155 aa)    
Predicted Functional Partners:
pnlA
Pectin lyase; Similar to SP:Q00374, and SP:Q00374; identified by sequence similarity; putative.
  
   
 0.729
AAO57579.1
Purine nucleoside permease, putative; Similar to GP:3764057, and GP:3764057; identified by sequence similarity; putative.
  
     0.599
AAO54434.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.569
hrpW1
Type III helper protein HrpW1; Similar to GP:3694999, and GP:8037796; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:3694999, and GP:8037796, identified by sequence similarity, putative.
 
   
 0.548
AAO53719.1
Sulfatase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00884.
  
     0.506
AAO57965.1
Fatty acid desaturase, putative; Identified by match to PFAM protein family HMM PF00487.
  
     0.436
AAO55050.1
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.428
pglA
Polygalacturonase; Similar to SP:P20041, GB:M81188, SP:P28754, GB:M81914, PID:143553, and PID:143556; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 28 family.
 
     0.418
hopAK1
Type III helper protein HopAK1; Previously known as HopPmaH (PMID11872842; Guttman et al, 2002); similar to GP:1783275, and GP:19071494; identified by sequence similarity; putative.
  
   
 0.414
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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