Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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hopAH1Type III effector HopAH1; Previously known as HolPtoAH (PMID12615215; Greenberg and Vinatzer, 2003); identified by match to PFAM protein family HMM PF02987; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (422 aa)    
Predicted Functional Partners:
hopAI1
Type III effector HopAI1; Previously known as HolPtoAI (PMID12615215; Greenberg and Vinatzer, 2003); similar to SP:P21456, GB:M33318, GB:X13897, GB:X13929, GB:X06401, GB:X13930, SP:P11509, SP:P20853, PID:180987, PID:29547, PID:30332, and PID:825700; identified by sequence similarity; putative.
     
 0.709
hopAG1
Type III effector HopAG1; This region is disrupted by an IS element insertion, interruption-N; this region is similar to the N-terminal region of HopAG1 in Pseudomonas syringae syringae; previously known as ORF28 (PMID12032338; Petnicki-Ocwieja et al, 2002).
      
 0.629
hopI1
Type III effector HopI1; Previously known as HopPmaI (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071496; identified by sequence similarity; putative.
      
 0.622
hopM1
Type III effector HopM1; Involved in the suppression of basal resistance and promotion of disease symptoms in plants. Mediates the ubiquitination and degradation, via the host proteasome, of a low-abundance immunity- associated protein in Arabidopsis thaliana. May be involved in the inhibition of a host vesicle trafficking pathway.
      
 0.498
hopAS1
Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002).
      
 0.495
avrE1
Type III effector protein AvrE1; See PMID:20190049 for expression data; similar to GB:K02096, GB:X66038, GB:X66039, GB:X66037, GB:X93626, SP:P01600, SP:P01602, SP:P01606, SP:P04431, PID:186006, PID:33150, PID:33307, PID:33311, PID:33313, PID:470592, PID:470594, PID:470596, PID:470600, PID:470602, PID:470604, PID:470606, PID:470608, PID:470610, PID:470612, PID:506423, PID:567136, PID:567138, PID:567154, PID:567158, PID:567168, PID:567172, PID:587326, PID:587328, PID:619603, PID:619613, PID:619614, PID:619624, PID:663000, PID:663001, PID:722458, PID:722540, PID:722552, PID:732746, PID:75 [...]
      
 0.492
hopR1
Type III effector HopR1; Previously known as HolPtoR; see PMID:20190049 for expression data; similar to GP:17431754, and GP:19071522; identified by sequence similarity; putative.
      
 0.427
hopAA1-1
Type III effector HopAA1-1; Previously known as HopPtoA1 (PMID12437299; Badel et al,2002) and CEL ORF5 (PMID10781092; Alfano et al, 2000); see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02987.
      
 0.409
hopS2
Type III effector HopS2; Previously known as ORF15 (PMID12032338; Petnicki-Ocwieja et al 2002) and HolPtoZ2 (PMID12615215; Greenberg and Vinatzer, 2003); see PMID:20190049 for expression data.
      
 0.403
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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