Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AAO54441.1Hypothetical protein; Identified by Glimmer2; putative. (403 aa)    
Predicted Functional Partners:
hopAI1
Type III effector HopAI1; Previously known as HolPtoAI (PMID12615215; Greenberg and Vinatzer, 2003); similar to SP:P21456, GB:M33318, GB:X13897, GB:X13929, GB:X06401, GB:X13930, SP:P11509, SP:P20853, PID:180987, PID:29547, PID:30332, and PID:825700; identified by sequence similarity; putative.
       0.462
hopO1-3
Type III effector HopO1-3; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by similarity to the N-terminal regions of HopO1-1 and HopO1-2; similar to GP:19071518, and GP:19071518; identified by sequence similarity; putative.
      
 0.431
hopAH2-1
Type III effector HopAH2-1; Identified by match to PFAM protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
      
 0.430
hopAH2-2
Type III effector HopAH2-2; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00150.
      
 0.415
hopT1-2
Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.
      
 0.408
hopS1
Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.
      
 0.407
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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