Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO54498.1Sigma-54 dependent transcriptional regulator/response regulator; See PMID:20190049 for expression data. (478 aa)    
Predicted Functional Partners:
AAO54499.1
Sensor histidine kinase.
 
 
 
 0.891
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.800
AAO54500.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
     
 0.764
ntrB
Nitrogen regulation protein NtrB.
 
 
 0.619
AAO58442.1
Response regulator/sensory box/GGDEF domain/EAL domain protein; See PMID:20190049 for expression data.
  
 
 0.558
gluQ
glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
       0.531
fleN
Flagellar synthesis regulator FleN; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02374.
  
 
 0.472
AAO56678.1
Sensor histidine kinase; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00512.
 
 
 0.463
AAO58458.1
Sensor histidine kinase/response regulator; See PMID:20190049 for expression data.
 
 
 0.429
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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