Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO54514.1Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer. (147 aa)    
Predicted Functional Partners:
AAO58384.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:9951239; identified by sequence similarity; putative.
  
     0.729
AAO58457.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
  
     0.721
pilS
Sensor protein PilS.
  
     0.627
AAO53959.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.615
AAO57585.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.607
AAO57582.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.600
AAO57771.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.579
AAO57674.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.560
ADD52990.1
Conserved protein of unknown function; PMID:20190049.
  
     0.555
AAO58683.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.552
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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