Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO54549.1The C-terminal residues of this protein are encoded by the end-sequence of an adjacent insertion sequence; similar to GP:9187579; identified by sequence similarity; putative. (534 aa)    
Predicted Functional Partners:
AAO54550.1
ISPsy5, Orf1; Note that this gene lacks an association with an ORF2, the transposase, as is found in other versions of this multicopy insertion sequence; similar to GP:8037784; identified by sequence similarity; putative.
       0.773
AAO54548.1
Integrase/recombinase XerC, putative; Similar to SP:P22885; identified by sequence similarity; putative; Belongs to the 'phage' integrase family.
       0.697
AAO54547.1
TonB-dependent receptor, putative; Identified by match to TIGR protein family HMM TIGR01783.
       0.448
AAO54551.1
ISPsy5, Orf1; The gene assignment is based on its position in a multicopy insertion sequence, directly adjacent to an ORF matching an HMM for the IS66 family; similar to GP:8037784; identified by sequence similarity; putative.
       0.423
AAO54545.1
TonB system transport protein.
       0.417
AAO54546.1
tonB domain protein.
       0.417
AAO54552.1
ISPsy5, transposase.
       0.400
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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