Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO54555.1Phospholipase D family protein; Similar to GP:7298757; identified by sequence similarity; putative. (422 aa)    
Predicted Functional Partners:
AAO54554.1
MotA/TolQ/ExbB proton channel family protein; Identified by match to PFAM protein family HMM PF01618.
       0.652
AAO54556.1
Transglycosylase, putative; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.570
clsB
Cardiolipin synthetase 2; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
  
   
 0.501
AAO58080.1
N-acetylmuramoyl-L-alanine amidase, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01510.
 
     0.425
AAO58483.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.424
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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