STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54598.1Membrane protein, putative; See PMID:20190049 for expression data; similar to GP:14090397; identified by sequence similarity; putative. (132 aa)    
Predicted Functional Partners:
AAO54599.1
Lipopolysaccharide biosynthesis protein; Similar to GP:2558982, and GP:14090396; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:2558982, and GP:14090396, identified by sequence similarity, putative.
 
  
 0.865
AAO54600.1
Glycosyl transferase, group 2 family protein; See PMID:20190049 for expression data; similar to SP:Q45539, GB:Z17227, SP:Q08334, PID:393379, and PID:571296; identified by sequence similarity; putative.
 
  
 0.841
AAO54602.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03594.
     
 0.821
AAO54601.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Similar to GP:7329199; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:7329199, identified by sequence similarity, putative; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.813
AAO54603.1
Glycosyl transferase, group 2 family protein; See PMID:20190049 for expression data; similar to SP:P29202, and PID:148782; identified by sequence similarity; putative.
  
  
 0.751
AAO54604.1
O-antigen ABC transporter, ATP-binding protein, putative; See PMID:20190049 for expression data; similar to GP:3142220, GB:X04409, GB:X56009, GB:M21139, GB:M21740, GB:M21140, GB:M21741, GB:M21141, GB:M21142, GB:X04408, GB:X07036, GB:M14631, GB:U12466, SP:P04895, PID:31913, PID:386745, PID:386746, and PID:527671; identified by sequence similarity; putative.
  
  
 0.708
AAO54605.1
O-antigen ABC transporter, permease protein, putative; See PMID:20190049 for expression data; similar to GP:13518097, and GP:2828671; identified by sequence similarity; putative.
  
  
 0.703
rfbC-1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.667
AAO59003.1
Identified by match to PFAM protein family HMM PF03390.
 
   
 0.518
AAO54597.1
Membrane protein, putative.
       0.488
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.