STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54735.1Regulatory protein, putative; See PMID:20190049 for expression data. (325 aa)    
Predicted Functional Partners:
AAO54736.1
RNA polymerase sigma-70 family protein; See PMID:20190049 for expression data; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.966
AAO53989.1
Regulatory protein, putative.
  
  
 
0.917
AAO53988.1
RNA polymerase sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.857
AAO54730.1
RNA polymerase sigma-70 family protein; See PMID:20190049 for expression data; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.853
AAO55668.1
TonB-dependent siderophore receptor, putative; Similar to SP:P25184, GB:M29874, GB:M29873, SP:P20813, and PID:181294; identified by sequence similarity; putative.
 
 
 0.853
AAO57161.1
TonB-dependent siderophore receptor; See PMID:20190049 for expression data; similar to SP:P25184; identified by sequence similarity; putative.
 
 
 0.841
AAO55650.1
RNA polymerase sigma-70 family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00140; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.840
AAO54810.1
RNA polymerase sigma-70 family protein; See PMID:20190049 for expression data; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.834
AAO55669.1
TonB-dependent siderophore receptor, putative; Similar to SP:P42512, GB:L17325, and PID:306323; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P42512, GB:L17325, and PID:306323, identified by sequence similarity, putative.
 
 
 0.828
AAO57584.1
TonB-dependent siderophore receptor; Similar to GP:2981048; identified by sequence similarity; putative.
 
  
 0.724
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.