STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrcRType III secretion protein HrcR; See PMID:20190049 for expression data; similar to GP:11276516; identified by sequence similarity; putative. (200 aa)    
Predicted Functional Partners:
hrcT
Type III secretion protein HrcT; See PMID:20190049 for expression data; similar to GP:3282783, and GP:11276518; identified by sequence similarity; putative.
 
 
 0.998
hrcS
Type III secretion protein HrcS; See PMID:20190049 for expression data; similar to GP:3282782, and GP:11276517; identified by sequence similarity; putative.
 
 
 0.998
hrcV
Type III secretion protein HrcV; See PMID:20190049 for expression data; similar to GP:11276509, GB:M27160, GB:M63235, GB:M63236, GB:M63237, GB:M63238, GB:M63239, GB:Y00819, GB:J03581, GB:U01873, SP:P14679, PID:340035, PID:340037, PID:340040, PID:37507, PID:37509, and PID:403422; identified by sequence similarity; putative.
 
 
 0.994
hrcU
Type III secretion protein HrcU; See PMID:20190049 for expression data; similar to GP:3282784, GB:U09068, PID:483878, PID:563405, PID:563415, PID:563418, PID:563428, PID:563458, PID:563460, PID:563477, PID:563481, and PID:976302; identified by sequence similarity; putative.
 
  
 0.992
hrcJ
Type III secretion protein HrcJ; See PMID:20190049 for expression data; similar to GP:9800448, GB:U09068, PID:483878, PID:563405, PID:563415, PID:563418, PID:563428, PID:563458, PID:563460, PID:563477, PID:563481, and PID:976302; identified by sequence similarity; putative.
 
 
 0.990
hrcN
Type III secretion cytoplasmic ATPase HrcN; ATPase which is probably required to catalyze the translocation of virulent proteins into the host cell during infection. Belongs to the ATPase alpha/beta chains family.
 
  
 0.968
hrcC
Outer-membrane type III secretion protein HrcC; Similar to GP:3228547, GB:M96789, SP:P35212, and PID:183223; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:3228547, GB:M96789, SP:P35212, and PID:183223, identified by sequence similarity, putative.
 
 
 0.942
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
 
 0.904
hrcQb
Type III secretion protein HrcQb; Component of the type III secretion system, which is required for effector protein delivery, parasitism, and pathogenicity. Probably participates in the formation of a C-ring-like assembly along with HrcQa (By similarity); Belongs to the FliN/MopA/SpaO family.
  
  
 0.891
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.878
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.