Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AAO55120.1ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; similar to GP:15159499; identified by sequence similarity; putative. (337 aa)    
Predicted Functional Partners:
AAO58698.1
Histidine ABC transporter, permease protein, putative.
 
 0.996
AAO56548.1
Glycine betaine/L-proline ABC transporter, permease protein.
 
 0.987
AAO54007.1
glycine/betaine/L-proline ABC transporter, permease protein.
 
 0.978
AAO58699.1
Histidine ABC transporter, ATP-binding protein, putative.
 
 0.964
AAO56549.1
Glycine betaine/L-proline ABC transporter, ATP-binding protein.
 
 0.954
AAO54006.1
glycine/betaine/L-proline ABC transporter, ATP-binding subunit.
 
 0.953
AAO56547.1
Glycine betaine ABC transporter, periplasmic glycine betaine-binding protein; Similar to SP:P14177, GB:M94345, GB:U12026, SP:P40121, PID:187456, and PID:515505; identified by sequence similarity; putative.
  
  
  0.942
AAO55142.1
Glycine betaine-binding protein, putative.
  
  
 0.926
AAO53720.1
Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.
  
  
 0.921
AAO54008.1
Glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein.
  
  
 0.920
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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