Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO55418.1Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer. (31 aa)    
Predicted Functional Partners:
bphO
Bacteriophytochrome heme oxygenase BphO; See PMID:20190049 for expression data; similar to GP:19880271; identified by sequence similarity; putative.
     
 0.708
bphP
Bacteriophytochrome histidine kinase; See PMID:20190049 for expression data; similar to SP:Q9LCC2, and GP:17980436; identified by sequence similarity; putative.
       0.568
AAO54574.1
RNA polymerase sigma factor sigW, putative; Similar to SP:Q45585; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.490
AAO55417.1
Identified by match to PFAM protein family HMM PF02951.
       0.449
AAO55415.1
BNR/Asp-box repeat protein; Identified by match to PFAM protein family HMM PF02012.
       0.441
AAO55416.1
Membrane protein, putative.
       0.441
phrB
Deoxyribodipyrimidine photolyase; See PMID:20190049 for expression data; Belongs to the DNA photolyase family.
      
 0.434
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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