STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO55438.1Aminotransferase, DegT/DnrJ/EryC1/StrS family; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00858; Belongs to the DegT/DnrJ/EryC1 family. (372 aa)    
Predicted Functional Partners:
AAO56924.1
Capsular polysaccharide biosynthesis protein; Similar to SP:Q48460; identified by sequence similarity; putative.
 
  
 0.871
AAO54599.1
Lipopolysaccharide biosynthesis protein; Similar to GP:2558982, and GP:14090396; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:2558982, and GP:14090396, identified by sequence similarity, putative.
  
 0.819
AAO55437.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
      0.819
AAO55436.1
See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00535.
 
  
 0.745
wbpM
Nucleotide sugar epimerase/dehydratase WbpM; See PMID:20190049 for expression data.
 
  
 0.701
AAO55433.1
Bacterial transferase, hexapeptide repeat protein; See PMID:20190049 for expression data; similar to GP:13183739; identified by sequence similarity; putative.
 
  
 0.683
AAO57373.1
Conserved hypothetical protein; Similar to SP:P71786, and SP:P71786; identified by sequence similarity; putative.
 
  
 0.650
AAO56916.1
Glycosyl transferase, group 2 family protein; Similar to SP:P23863, PID:42839, GB:U00096, PID:1651431, PID:1651438, and PID:1787139; identified by sequence similarity; putative.
 
  
 0.646
rfbB-1
dTDP-glucose 4,6-dehydratase; See PMID:20190049 for expression data; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 0.584
rfbB-2
dTDP-glucose 4,6-dehydratase; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01777; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 0.578
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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