close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO55516.1FixG-related protein; Similar to SP:P18396; identified by sequence similarity; putative. (470 aa)    
Predicted Functional Partners:
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02433.
 
  
 0.988
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.980
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Identified by match to PFAM protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.976
ccoS
Cytochrome oxidase maturation protein, cbb3-type; Identified by match to PFAM protein family HMM PF03597.
 
  
 0.954
AAO55512.1
Membrane protein, putative; Similar to GP:9947507; identified by sequence similarity; putative.
 
   
 0.949
AAO55515.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.943
AAO55514.1
Copper-translocating P-type ATPase; Identified by match to TIGR protein family HMM TIGR01522.
 
  
 0.938
hemN
Oxygen-independent coproporphyrinogen III oxidase; See PMID:20190049 for expression data; similar to SP:P32131; identified by sequence similarity; putative; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.913
ccoQ
Cytochrome c oxidase, cbb3-type, CcoQ subunit; See PMID:20190049 for expression data; similar to GP:21702710; identified by sequence similarity; putative.
 
  
 0.748
AAO54221.1
Outer membrane protein OmpW; See PMID:20190049 for expression data.
 
    0.622
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.