STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccoNCytochrome c oxidase, cbb3-type, subunit I; Identified by match to PFAM protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. (480 aa)    
Predicted Functional Partners:
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.999
ccoQ
Cytochrome c oxidase, cbb3-type, CcoQ subunit; See PMID:20190049 for expression data; similar to GP:21702710; identified by sequence similarity; putative.
 
 
 0.999
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02433.
 0.999
AAO55516.1
FixG-related protein; Similar to SP:P18396; identified by sequence similarity; putative.
 
  
 0.976
cyoC
Cytochrome o ubiquinol oxidase, subunit III; See PMID:20190049 for expression data.
  
 0.953
cyoA
Cytochrome o ubiquinol oxidase, subunit II; See PMID:20190049 for expression data.
   
 0.952
cyoB
Cytochrome o ubiquinol oxidase, subunit I; See PMID:20190049 for expression data; Belongs to the heme-copper respiratory oxidase family.
   
 0.950
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
    
 0.920
cyoD
Cytochrome o ubiquinol oxidase, subunit IV; See PMID:20190049 for expression data.
     
 0.909
hemN
Oxygen-independent coproporphyrinogen III oxidase; See PMID:20190049 for expression data; similar to SP:P32131; identified by sequence similarity; putative; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.900
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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