STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO55523.1Conserved domain protein; See PMID:20190049 for expression data; similar to GP:9947519; identified by sequence similarity; putative. (330 aa)    
Predicted Functional Partners:
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
       0.658
ccoQ
Cytochrome c oxidase, cbb3-type, CcoQ subunit; See PMID:20190049 for expression data; similar to GP:21702710; identified by sequence similarity; putative.
       0.617
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02433.
       0.617
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Identified by match to PFAM protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.
       0.616
ccoS
Cytochrome oxidase maturation protein, cbb3-type; Identified by match to PFAM protein family HMM PF03597.
 
     0.522
AAO58227.1
Phosphomethylpyrimidine kinase, putative.
  
    0.497
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.