STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO55525.1Identified by match to PFAM protein family HMM PF02368. (618 aa)    
Predicted Functional Partners:
nuoM
NADH dehydrogenase I, M subunit; See PMID:20190049 for expression data.
    
 
 0.715
AAO55524.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.570
AAO55526.1
ISPssy, transposase; Similar to GP:13094159, and GP:4514540; identified by sequence similarity; putative.
       0.568
nuoCD
NADH dehydrogenase I, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.547
AAO54070.1
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.493
AAO55169.1
Autotransporter, putative; Similar to GP:3646417, and GP:4115628; identified by sequence similarity; putative.
   
 
 0.434
AAO55170.1
Autotransporter, putative; Similar to GP:4115629, and GP:9438192; identified by sequence similarity; putative.
   
 
 0.434
AAO56750.1
Conserved hypothetical protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
   
 
 0.434
AAO59007.1
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.434
AAO57789.1
Oxidoreductase, iron-sulfur-binding protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00970.
    
 
 0.421
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.