STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO55529.1Autotransporter, putative; Similar to GP:5305639; identified by sequence similarity; putative. (769 aa)    
Predicted Functional Partners:
AAO56263.1
Autotransporter, putative; Similar to GP:15162153; identified by sequence similarity; putative.
  
   
 0.756
AAO53710.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15978663; identified by sequence similarity; putative.
  
     0.715
fimD
Outer membrane usher protein fimD.
  
  
 0.687
AAO53925.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:606038; identified by sequence similarity; putative.
  
     0.679
AAO55743.1
Fimbrial protein, putative.
  
  
 0.651
papD
Chaperone protein PapD.
  
    0.631
AAO54734.1
iron(III) dicitrate transport protein fecA; Similar to SP:P13036; identified by sequence similarity; putative.
  
     0.614
AAO56267.1
Lipopolysaccharide core biosynthesis domain protein; See PMID:20190049 for expression data; similar to GP:147572, and SP:P27241; identified by sequence similarity; putative.
  
     0.603
AAO57731.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02683; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.589
fimA
Type I pilus biogensis protein FimA.
  
  
 0.585
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.