Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AAO55533.1CAAX amino terminal protease family protein; Identified by match to PFAM protein family HMM PF02517. (266 aa)    
Predicted Functional Partners:
aer-2
Aerotaxis receptor; See PMID:20190049 for expression data.
     
 0.934
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.899
aer-1
Aerotaxis receptor; See PMID:20190049 for expression data; similar to GP:4545127, and GP:4545127; identified by sequence similarity; putative.
     
 0.808
rlmM
Conserved hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.633
AAO54446.1
Methyl-accepting chemotaxis protein; See PMID:20190049 for expression data; similar to GP:4235392; identified by sequence similarity; putative.
     
 0.628
AAO56085.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04171.
  
    0.588
AAO57321.1
ABC transporter, permease protein; See PMID:20190049 for expression data.
  
  
 0.581
AAO58104.1
Conserved domain protein; See PMID:20190049 for expression data; similar to GP:17428415; identified by sequence similarity; putative.
  
     0.527
AAO56319.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.521
AAO58341.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
  
     0.490
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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