Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gap-2Glyceraldehyde 3-phosphate dehydrogenase, type I; See PMID:20190049 for expression data; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (482 aa)    
Predicted Functional Partners:
pgk
Phosphoglycerate kinase; Identified by match to PFAM protein family HMM PF00162; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.
 
 0.993
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 0.993
fba
Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
 0.972
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 0.946
pgi
Glucose-6-phosphate isomerase; Identified by match to PFAM protein family HMM PF00342; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00342.
  
 0.933
gap-1
Glyceraldehyde 3-phosphate dehydrogenase, type I; See PMID:20190049 for expression data; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 
0.910
AAO55911.1
Transketolase, N-terminal subunit; Similar to GP:15157018; identified by sequence similarity; putative.
    
  0.904
AAO55912.1
Transketolase, C-terminal subunit; Similar to GB:D10483, SP:P08337, GB:M20791, GB:X04831, PID:147795, PID:216513, PID:40867, PID:42071, PID:473771, GB:U00096, and PID:1786288; identified by sequence similarity; putative.
    
  0.904
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.879
zwf-1
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
 0.864
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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