Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AAO55632.1vacJ lipoprotein, putative; See PMID:20190049 for expression data. (233 aa)    
Predicted Functional Partners:
AAO57894.1
Mce-related protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02470.
 
   
 0.815
AAO57893.1
Toluene tolerance protein, putative; Similar to GP:4336801, and GP:4336801; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:4336801, and GP:4336801, identified by sequence similarity, putative.
 
 
 
 0.743
AAO55141.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
 
  
 0.741
AAO57896.1
Toluene tolerance ABC transporter, ATP-binding protein, putative; See PMID:20190049 for expression data; similar to GP:4336798; identified by sequence similarity; putative.
 
   
 0.713
AAO55630.1
Conserved protein of unknown function; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.
       0.679
AAO55631.1
Conserved hypothetical protein.
       0.584
AAO55634.1
Response regulator; See PMID:20190049 for expression data.
       0.531
AAO55635.1
Anti-anti-sigma factor, putative; See PMID:20190049 for expression data.
       0.531
mreC
Rod shape-determining protein MreC; See PMID:20190049 for expression data; similar to GP:6652781; identified by sequence similarity; putative.
 
     0.514
AAO57895.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00056.
 
   
 0.493
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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